Bangladesh had harbored numerous submergence tolerant rice local cultivars or landraces (popularly known as Joli Aman). As the local cultivars endure intervallic flash-flooding year after year, it is presumed that genes/Quantitative Trait Loci (QTLs) that give resilience are probably going to be available in these genotypes. In submergence screening, the performance of three tested accessions (Lakhi, Atshotti and Damsi) demonstrated them to be as tolerant as the check FR13A. Other germplasm accessions (DSL-78-8, Laldepa, Putidepa, Laxmi digha) performed great recuperation capacity after de-submergence. Damsi, Rajasail, Haloi, Lal Digha, Manik Digha, Bhawalia, DSL-78-8, Putidepa, Atshotti and Jalda IRRI don't have the SUB1 QTL and furthermore not like the BR5, a submergence susceptible check variety. Bajal, Horkoach, Pathornuti, Laxmi Digha, Horinga Digha, Bhawalia Digha and BR5 was not amplified by Gns2 conferring SUB1 QTL (submergence tolerance specific QTL). Significantly, the local cultivars i.e. DSL-78-8, Putidepa and Sadadanga boro were identified as having better submergence tolerance however having no resistant alleles of GnS2 and Sub1C173, indel markers specific to SUB1 QTL. The result of molecular screening revealed new submergence tolerant rice cultivars which do not possess SUB1 QTL. To discover new submergence tolerant QTLs other than SUB1 through QTL mapping, newly identified submergence tolerant germplasm can be utilized.
| Published in | International Journal of Genetics and Genomics (Volume 6, Issue 4) |
| DOI | 10.11648/j.ijgg.20180604.12 |
| Page(s) | 44-51 |
| Creative Commons |
This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited. |
| Copyright |
Copyright © The Author(s), 2019. Published by Science Publishing Group |
Submergence, Molecular Screening, Accessions, Landraces, SUB1 QTL, Indel Markers
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APA Style
Al Amin, Khandakar Md Iftekharuddaula, Animesh Sarker, Ashraf Hossain Talukder, Sharmishtha Ghoshal, et al. (2019). Identification of Novel Submergence Tolerant Local Rice Cultivars of Bangladesh. International Journal of Genetics and Genomics, 6(4), 44-51. https://doi.org/10.11648/j.ijgg.20180604.12
ACS Style
Al Amin; Khandakar Md Iftekharuddaula; Animesh Sarker; Ashraf Hossain Talukder; Sharmishtha Ghoshal, et al. Identification of Novel Submergence Tolerant Local Rice Cultivars of Bangladesh. Int. J. Genet. Genomics 2019, 6(4), 44-51. doi: 10.11648/j.ijgg.20180604.12
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Download@article{10.11648/j.ijgg.20180604.12,
author = {Al Amin and Khandakar Md Iftekharuddaula and Animesh Sarker and Ashraf Hossain Talukder and Sharmishtha Ghoshal and A. K. M. Shalahuddin and Tamal Lata Aditya and Md Ansar Ali and Bertrand Collard},
title = {Identification of Novel Submergence Tolerant Local Rice Cultivars of Bangladesh},
journal = {International Journal of Genetics and Genomics},
volume = {6},
number = {4},
pages = {44-51},
doi = {10.11648/j.ijgg.20180604.12},
url = {https://doi.org/10.11648/j.ijgg.20180604.12},
eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ijgg.20180604.12},
abstract = {Bangladesh had harbored numerous submergence tolerant rice local cultivars or landraces (popularly known as Joli Aman). As the local cultivars endure intervallic flash-flooding year after year, it is presumed that genes/Quantitative Trait Loci (QTLs) that give resilience are probably going to be available in these genotypes. In submergence screening, the performance of three tested accessions (Lakhi, Atshotti and Damsi) demonstrated them to be as tolerant as the check FR13A. Other germplasm accessions (DSL-78-8, Laldepa, Putidepa, Laxmi digha) performed great recuperation capacity after de-submergence. Damsi, Rajasail, Haloi, Lal Digha, Manik Digha, Bhawalia, DSL-78-8, Putidepa, Atshotti and Jalda IRRI don't have the SUB1 QTL and furthermore not like the BR5, a submergence susceptible check variety. Bajal, Horkoach, Pathornuti, Laxmi Digha, Horinga Digha, Bhawalia Digha and BR5 was not amplified by Gns2 conferring SUB1 QTL (submergence tolerance specific QTL). Significantly, the local cultivars i.e. DSL-78-8, Putidepa and Sadadanga boro were identified as having better submergence tolerance however having no resistant alleles of GnS2 and Sub1C173, indel markers specific to SUB1 QTL. The result of molecular screening revealed new submergence tolerant rice cultivars which do not possess SUB1 QTL. To discover new submergence tolerant QTLs other than SUB1 through QTL mapping, newly identified submergence tolerant germplasm can be utilized.},
year = {2019}
}
TY - JOUR T1 - Identification of Novel Submergence Tolerant Local Rice Cultivars of Bangladesh AU - Al Amin AU - Khandakar Md Iftekharuddaula AU - Animesh Sarker AU - Ashraf Hossain Talukder AU - Sharmishtha Ghoshal AU - A. K. M. Shalahuddin AU - Tamal Lata Aditya AU - Md Ansar Ali AU - Bertrand Collard Y1 - 2019/01/28 PY - 2019 N1 - https://doi.org/10.11648/j.ijgg.20180604.12 DO - 10.11648/j.ijgg.20180604.12 T2 - International Journal of Genetics and Genomics JF - International Journal of Genetics and Genomics JO - International Journal of Genetics and Genomics SP - 44 EP - 51 PB - Science Publishing Group SN - 2376-7359 UR - https://doi.org/10.11648/j.ijgg.20180604.12 AB - Bangladesh had harbored numerous submergence tolerant rice local cultivars or landraces (popularly known as Joli Aman). As the local cultivars endure intervallic flash-flooding year after year, it is presumed that genes/Quantitative Trait Loci (QTLs) that give resilience are probably going to be available in these genotypes. In submergence screening, the performance of three tested accessions (Lakhi, Atshotti and Damsi) demonstrated them to be as tolerant as the check FR13A. Other germplasm accessions (DSL-78-8, Laldepa, Putidepa, Laxmi digha) performed great recuperation capacity after de-submergence. Damsi, Rajasail, Haloi, Lal Digha, Manik Digha, Bhawalia, DSL-78-8, Putidepa, Atshotti and Jalda IRRI don't have the SUB1 QTL and furthermore not like the BR5, a submergence susceptible check variety. Bajal, Horkoach, Pathornuti, Laxmi Digha, Horinga Digha, Bhawalia Digha and BR5 was not amplified by Gns2 conferring SUB1 QTL (submergence tolerance specific QTL). Significantly, the local cultivars i.e. DSL-78-8, Putidepa and Sadadanga boro were identified as having better submergence tolerance however having no resistant alleles of GnS2 and Sub1C173, indel markers specific to SUB1 QTL. The result of molecular screening revealed new submergence tolerant rice cultivars which do not possess SUB1 QTL. To discover new submergence tolerant QTLs other than SUB1 through QTL mapping, newly identified submergence tolerant germplasm can be utilized. VL - 6 IS - 4 ER -
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